Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora.
Identifieur interne : 001C54 ( Main/Exploration ); précédent : 001C53; suivant : 001C55Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora.
Auteurs : Jongsun Park [Corée du Sud] ; Bongsoo Park ; Narayanan Veeraraghavan [États-Unis] ; Kyongyong Jung [Corée du Sud] ; Yong-Hwan Lee [Corée du Sud] ; Jaime E. Blair [États-Unis] ; David M. Geiser [États-Unis] ; Scott Isard [États-Unis] ; Michele A. Mansfield [États-Unis] ; Ekaterina Nikolaeva [États-Unis] ; Sook-Young Park [États-Unis] ; Joseph Russo [États-Unis] ; Seong H. Kim ; Matthew Greene ; Kelly L. Ivors ; Yilmaz Balci ; Masoomeh Peiman ; Donald C. Erwin ; Michael D. Coffey ; Amy Rossman [États-Unis] ; David Farr [États-Unis] ; Erica Cline [États-Unis] ; Niklaus J. Grünwald [États-Unis] ; Douglas G. Luster [États-Unis] ; Julia Schrandt [États-Unis] ; Frank Martin [États-Unis] ; Olaf K. Ribeiro [États-Unis] ; Izabela Makalowska ; Seogchan Kang [États-Unis]Source :
- Plant disease [ 0191-2917 ] ; 2008.
Abstract
Phytophthora spp. represent a serious threat to agricultural and ecological systems. Many novel Phytophthora spp. have been reported in recent years, which is indicative of our limited understanding of the ecology and diversity of Phytophthora spp. in nature. Systematic cataloging of genotypic and phenotypic information on isolates of previously described species serves as a baseline for identification, classification, and risk assessment of new Phytophthora isolates. The Phytophthora Database (PD) was established to catalog such data in a web-accessible and searchable format. To support the identification of new Phytophthora isolates via comparison of their sequences at one or more loci with the corresponding sequences derived from the isolates archived in the PD, we generated and deposited sequence data from more than 1,500 isolates representing the known diversity in the genus. Data search and analysis tools in the PD include BLAST, Phyloviewer (a program for building phylogenetic trees using sequences of selected isolates), and Virtual Gel (a program for generating expected restriction patterns for given sequences). The PD also provides a customized means of storing and sharing data via the web. The PD serves as a model that easily can be adopted to develop databases for other important pathogen groups.
DOI: 10.1094/PDIS-92-6-0966
PubMed: 30769728
Affiliations:
- Corée du Sud, États-Unis
- Californie, Maryland, Oregon, Pennsylvanie, Région capitale de Séoul, Washington (État)
- Séoul, University Park (Pennsylvanie)
- Université d'État de Pennsylvanie, Université nationale de Séoul
Links toward previous steps (curation, corpus...)
Le document en format XML
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Geiser</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Isard, Scott" sort="Isard, Scott" uniqKey="Isard S" first="Scott" last="Isard">Scott Isard</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Mansfield, Michele A" sort="Mansfield, Michele A" uniqKey="Mansfield M" first="Michele A" last="Mansfield">Michele A. Mansfield</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Nikolaeva, Ekaterina" sort="Nikolaeva, Ekaterina" uniqKey="Nikolaeva E" first="Ekaterina" last="Nikolaeva">Ekaterina Nikolaeva</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Park, Sook Young" sort="Park, Sook Young" uniqKey="Park S" first="Sook-Young" last="Park">Sook-Young Park</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Russo, Joseph" sort="Russo, Joseph" uniqKey="Russo J" first="Joseph" last="Russo">Joseph Russo</name><affiliation wicri:level="2"><nlm:affiliation>ZedX, Inc., Bellefonte, PA 16823.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>ZedX, Inc., Bellefonte</wicri:cityArea></affiliation></author><author><name sortKey="Kim, Seong H" sort="Kim, Seong H" uniqKey="Kim S" first="Seong H" last="Kim">Seong H. Kim</name><affiliation><nlm:affiliation>Pennsylvania Department of Agriculture, Harrisburg 17110.</nlm:affiliation><wicri:noCountry code="subField">Harrisburg 17110</wicri:noCountry></affiliation></author><author><name sortKey="Greene, Matthew" sort="Greene, Matthew" uniqKey="Greene M" first="Matthew" last="Greene">Matthew Greene</name><affiliation><nlm:affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</nlm:affiliation><wicri:noCountry code="subField">Fletcher 28732</wicri:noCountry></affiliation></author><author><name sortKey="Ivors, Kelly L" sort="Ivors, Kelly L" uniqKey="Ivors K" first="Kelly L" last="Ivors">Kelly L. Ivors</name><affiliation><nlm:affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</nlm:affiliation><wicri:noCountry code="subField">Fletcher 28732</wicri:noCountry></affiliation></author><author><name sortKey="Balci, Yilmaz" sort="Balci, Yilmaz" uniqKey="Balci Y" first="Yilmaz" last="Balci">Yilmaz Balci</name><affiliation><nlm:affiliation>Division of Plant & Soil Sciences, West Virginia University, Morgantown 26506.</nlm:affiliation><wicri:noCountry code="subField">Morgantown 26506</wicri:noCountry></affiliation></author><author><name sortKey="Peiman, Masoomeh" sort="Peiman, Masoomeh" uniqKey="Peiman M" first="Masoomeh" last="Peiman">Masoomeh Peiman</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Erwin, Donald C" sort="Erwin, Donald C" uniqKey="Erwin D" first="Donald C" last="Erwin">Donald C. Erwin</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Coffey, Michael D" sort="Coffey, Michael D" uniqKey="Coffey M" first="Michael D" last="Coffey">Michael D. Coffey</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Rossman, Amy" sort="Rossman, Amy" uniqKey="Rossman A" first="Amy" last="Rossman">Amy Rossman</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Farr, David" sort="Farr, David" uniqKey="Farr D" first="David" last="Farr">David Farr</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Cline, Erica" sort="Cline, Erica" uniqKey="Cline E" first="Erica" last="Cline">Erica Cline</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Grunwald, Niklaus J" sort="Grunwald, Niklaus J" uniqKey="Grunwald N" first="Niklaus J" last="Grünwald">Niklaus J. Grünwald</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS Horticultural Crops Research Laboratory, Corvallis, OR 97330.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Oregon</region></placeName><wicri:cityArea>USDA-ARS Horticultural Crops Research Laboratory, Corvallis</wicri:cityArea></affiliation></author><author><name sortKey="Luster, Douglas G" sort="Luster, Douglas G" uniqKey="Luster D" first="Douglas G" last="Luster">Douglas G. Luster</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Foreign Disease-Weed Science Research Unit, Ft. Detrick, MD 21702.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>USDA-ARS, Foreign Disease-Weed Science Research Unit, Ft. Detrick</wicri:cityArea></affiliation></author><author><name sortKey="Schrandt, Julia" sort="Schrandt, Julia" uniqKey="Schrandt J" first="Julia" last="Schrandt">Julia Schrandt</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Salinas, CA 93906.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>USDA-ARS, Salinas</wicri:cityArea></affiliation></author><author><name sortKey="Martin, Frank" sort="Martin, Frank" uniqKey="Martin F" first="Frank" last="Martin">Frank Martin</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Salinas, CA 93906.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>USDA-ARS, Salinas</wicri:cityArea></affiliation></author><author><name sortKey="Ribeiro, Olaf K" sort="Ribeiro, Olaf K" uniqKey="Ribeiro O" first="Olaf K" last="Ribeiro">Olaf K. Ribeiro</name><affiliation wicri:level="2"><nlm:affiliation>Ribeiro Plant Lab, Inc., Bainbridge Island, WA 98110.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Washington (État)</region></placeName><wicri:cityArea>Ribeiro Plant Lab, Inc., Bainbridge Island</wicri:cityArea></affiliation></author><author><name sortKey="Makalowska, Izabela" sort="Makalowska, Izabela" uniqKey="Makalowska I" first="Izabela" last="Makalowska">Izabela Makalowska</name><affiliation><nlm:affiliation>Center for Computational Genomics.</nlm:affiliation><wicri:noCountry code="no comma">Center for Computational Genomics.</wicri:noCountry></affiliation></author><author><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:30769728</idno><idno type="pmid">30769728</idno><idno type="doi">10.1094/PDIS-92-6-0966</idno><idno type="wicri:Area/Main/Corpus">001D91</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001D91</idno><idno type="wicri:Area/Main/Curation">001D91</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001D91</idno><idno type="wicri:Area/Main/Exploration">001D91</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora.</title><author><name sortKey="Park, Jongsun" sort="Park, Jongsun" uniqKey="Park J" first="Jongsun" last="Park">Jongsun Park</name><affiliation wicri:level="4"><nlm:affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University, Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName></affiliation></author><author><name sortKey="Park, Bongsoo" sort="Park, Bongsoo" uniqKey="Park B" first="Bongsoo" last="Park">Bongsoo Park</name><affiliation><nlm:affiliation>Department of Plant Pathology.</nlm:affiliation><wicri:noCountry code="no comma">Department of Plant Pathology.</wicri:noCountry></affiliation></author><author><name sortKey="Veeraraghavan, Narayanan" sort="Veeraraghavan, Narayanan" uniqKey="Veeraraghavan N" first="Narayanan" last="Veeraraghavan">Narayanan Veeraraghavan</name><affiliation wicri:level="4"><nlm:affiliation>Center for Computational Genomics, Pennsylvania State University, University Park 16802.</nlm:affiliation><orgName type="university">Université d'État de Pennsylvanie</orgName><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Jung, Kyongyong" sort="Jung, Kyongyong" uniqKey="Jung K" first="Kyongyong" last="Jung">Kyongyong Jung</name><affiliation wicri:level="4"><nlm:affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University.</nlm:affiliation><country>Corée du Sud</country><placeName><settlement type="city">Séoul</settlement></placeName><orgName type="university">Université nationale de Séoul</orgName></affiliation></author><author><name sortKey="Lee, Yong Hwan" sort="Lee, Yong Hwan" uniqKey="Lee Y" first="Yong-Hwan" last="Lee">Yong-Hwan Lee</name><affiliation wicri:level="4"><nlm:affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University.</nlm:affiliation><country>Corée du Sud</country><placeName><settlement type="city">Séoul</settlement></placeName><orgName type="university">Université nationale de Séoul</orgName></affiliation></author><author><name sortKey="Blair, Jaime E" sort="Blair, Jaime E" uniqKey="Blair J" first="Jaime E" last="Blair">Jaime E. Blair</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Geiser, David M" sort="Geiser, David M" uniqKey="Geiser D" first="David M" last="Geiser">David M. Geiser</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Isard, Scott" sort="Isard, Scott" uniqKey="Isard S" first="Scott" last="Isard">Scott Isard</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Mansfield, Michele A" sort="Mansfield, Michele A" uniqKey="Mansfield M" first="Michele A" last="Mansfield">Michele A. Mansfield</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Nikolaeva, Ekaterina" sort="Nikolaeva, Ekaterina" uniqKey="Nikolaeva E" first="Ekaterina" last="Nikolaeva">Ekaterina Nikolaeva</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Park, Sook Young" sort="Park, Sook Young" uniqKey="Park S" first="Sook-Young" last="Park">Sook-Young Park</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Russo, Joseph" sort="Russo, Joseph" uniqKey="Russo J" first="Joseph" last="Russo">Joseph Russo</name><affiliation wicri:level="2"><nlm:affiliation>ZedX, Inc., Bellefonte, PA 16823.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>ZedX, Inc., Bellefonte</wicri:cityArea></affiliation></author><author><name sortKey="Kim, Seong H" sort="Kim, Seong H" uniqKey="Kim S" first="Seong H" last="Kim">Seong H. Kim</name><affiliation><nlm:affiliation>Pennsylvania Department of Agriculture, Harrisburg 17110.</nlm:affiliation><wicri:noCountry code="subField">Harrisburg 17110</wicri:noCountry></affiliation></author><author><name sortKey="Greene, Matthew" sort="Greene, Matthew" uniqKey="Greene M" first="Matthew" last="Greene">Matthew Greene</name><affiliation><nlm:affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</nlm:affiliation><wicri:noCountry code="subField">Fletcher 28732</wicri:noCountry></affiliation></author><author><name sortKey="Ivors, Kelly L" sort="Ivors, Kelly L" uniqKey="Ivors K" first="Kelly L" last="Ivors">Kelly L. Ivors</name><affiliation><nlm:affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</nlm:affiliation><wicri:noCountry code="subField">Fletcher 28732</wicri:noCountry></affiliation></author><author><name sortKey="Balci, Yilmaz" sort="Balci, Yilmaz" uniqKey="Balci Y" first="Yilmaz" last="Balci">Yilmaz Balci</name><affiliation><nlm:affiliation>Division of Plant & Soil Sciences, West Virginia University, Morgantown 26506.</nlm:affiliation><wicri:noCountry code="subField">Morgantown 26506</wicri:noCountry></affiliation></author><author><name sortKey="Peiman, Masoomeh" sort="Peiman, Masoomeh" uniqKey="Peiman M" first="Masoomeh" last="Peiman">Masoomeh Peiman</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Erwin, Donald C" sort="Erwin, Donald C" uniqKey="Erwin D" first="Donald C" last="Erwin">Donald C. Erwin</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Coffey, Michael D" sort="Coffey, Michael D" uniqKey="Coffey M" first="Michael D" last="Coffey">Michael D. Coffey</name><affiliation><nlm:affiliation>Department of Plant Pathology, University of California, Riverside 92521.</nlm:affiliation><wicri:noCountry code="subField">Riverside 92521</wicri:noCountry></affiliation></author><author><name sortKey="Rossman, Amy" sort="Rossman, Amy" uniqKey="Rossman A" first="Amy" last="Rossman">Amy Rossman</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Farr, David" sort="Farr, David" uniqKey="Farr D" first="David" last="Farr">David Farr</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Cline, Erica" sort="Cline, Erica" uniqKey="Cline E" first="Erica" last="Cline">Erica Cline</name><affiliation wicri:level="2"><nlm:affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville</wicri:cityArea></affiliation></author><author><name sortKey="Grunwald, Niklaus J" sort="Grunwald, Niklaus J" uniqKey="Grunwald N" first="Niklaus J" last="Grünwald">Niklaus J. Grünwald</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS Horticultural Crops Research Laboratory, Corvallis, OR 97330.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Oregon</region></placeName><wicri:cityArea>USDA-ARS Horticultural Crops Research Laboratory, Corvallis</wicri:cityArea></affiliation></author><author><name sortKey="Luster, Douglas G" sort="Luster, Douglas G" uniqKey="Luster D" first="Douglas G" last="Luster">Douglas G. Luster</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Foreign Disease-Weed Science Research Unit, Ft. Detrick, MD 21702.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>USDA-ARS, Foreign Disease-Weed Science Research Unit, Ft. Detrick</wicri:cityArea></affiliation></author><author><name sortKey="Schrandt, Julia" sort="Schrandt, Julia" uniqKey="Schrandt J" first="Julia" last="Schrandt">Julia Schrandt</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Salinas, CA 93906.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>USDA-ARS, Salinas</wicri:cityArea></affiliation></author><author><name sortKey="Martin, Frank" sort="Martin, Frank" uniqKey="Martin F" first="Frank" last="Martin">Frank Martin</name><affiliation wicri:level="2"><nlm:affiliation>USDA-ARS, Salinas, CA 93906.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>USDA-ARS, Salinas</wicri:cityArea></affiliation></author><author><name sortKey="Ribeiro, Olaf K" sort="Ribeiro, Olaf K" uniqKey="Ribeiro O" first="Olaf K" last="Ribeiro">Olaf K. Ribeiro</name><affiliation wicri:level="2"><nlm:affiliation>Ribeiro Plant Lab, Inc., Bainbridge Island, WA 98110.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Washington (État)</region></placeName><wicri:cityArea>Ribeiro Plant Lab, Inc., Bainbridge Island</wicri:cityArea></affiliation></author><author><name sortKey="Makalowska, Izabela" sort="Makalowska, Izabela" uniqKey="Makalowska I" first="Izabela" last="Makalowska">Izabela Makalowska</name><affiliation><nlm:affiliation>Center for Computational Genomics.</nlm:affiliation><wicri:noCountry code="no comma">Center for Computational Genomics.</wicri:noCountry></affiliation></author><author><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology, Pennsylvania State University.</nlm:affiliation><country>États-Unis</country><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author></analytic><series><title level="j">Plant disease</title><idno type="ISSN">0191-2917</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora spp. represent a serious threat to agricultural and ecological systems. Many novel Phytophthora spp. have been reported in recent years, which is indicative of our limited understanding of the ecology and diversity of Phytophthora spp. in nature. Systematic cataloging of genotypic and phenotypic information on isolates of previously described species serves as a baseline for identification, classification, and risk assessment of new Phytophthora isolates. The Phytophthora Database (PD) was established to catalog such data in a web-accessible and searchable format. To support the identification of new Phytophthora isolates via comparison of their sequences at one or more loci with the corresponding sequences derived from the isolates archived in the PD, we generated and deposited sequence data from more than 1,500 isolates representing the known diversity in the genus. Data search and analysis tools in the PD include BLAST, Phyloviewer (a program for building phylogenetic trees using sequences of selected isolates), and Virtual Gel (a program for generating expected restriction patterns for given sequences). The PD also provides a customized means of storing and sharing data via the web. The PD serves as a model that easily can be adopted to develop databases for other important pathogen groups.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30769728</PMID><DateRevised><Year>2019</Year><Month>11</Month><Day>20</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0191-2917</ISSN><JournalIssue CitedMedium="Print"><Volume>92</Volume><Issue>6</Issue><PubDate><Year>2008</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Plant disease</Title><ISOAbbreviation>Plant Dis</ISOAbbreviation></Journal><ArticleTitle>Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora.</ArticleTitle><Pagination><MedlinePgn>966-972</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/PDIS-92-6-0966</ELocationID><Abstract><AbstractText>Phytophthora spp. represent a serious threat to agricultural and ecological systems. Many novel Phytophthora spp. have been reported in recent years, which is indicative of our limited understanding of the ecology and diversity of Phytophthora spp. in nature. Systematic cataloging of genotypic and phenotypic information on isolates of previously described species serves as a baseline for identification, classification, and risk assessment of new Phytophthora isolates. The Phytophthora Database (PD) was established to catalog such data in a web-accessible and searchable format. To support the identification of new Phytophthora isolates via comparison of their sequences at one or more loci with the corresponding sequences derived from the isolates archived in the PD, we generated and deposited sequence data from more than 1,500 isolates representing the known diversity in the genus. Data search and analysis tools in the PD include BLAST, Phyloviewer (a program for building phylogenetic trees using sequences of selected isolates), and Virtual Gel (a program for generating expected restriction patterns for given sequences). The PD also provides a customized means of storing and sharing data via the web. The PD serves as a model that easily can be adopted to develop databases for other important pathogen groups.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y" EqualContrib="Y"><LastName>Park</LastName><ForeName>Jongsun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Park</LastName><ForeName>Bongsoo</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Veeraraghavan</LastName><ForeName>Narayanan</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Center for Computational Genomics, Pennsylvania State University, University Park 16802.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jung</LastName><ForeName>Kyongyong</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Yong-Hwan</ForeName><Initials>YH</Initials><AffiliationInfo><Affiliation>School of Agricultural Biotechnology and Fungal Bioinformatics Laboratory, Seoul National University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Blair</LastName><ForeName>Jaime E</ForeName><Initials>JE</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Geiser</LastName><ForeName>David M</ForeName><Initials>DM</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Isard</LastName><ForeName>Scott</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Michele A</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nikolaeva</LastName><ForeName>Ekaterina</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Sook-Young</ForeName><Initials>SY</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Russo</LastName><ForeName>Joseph</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>ZedX, Inc., Bellefonte, PA 16823.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Seong H</ForeName><Initials>SH</Initials><AffiliationInfo><Affiliation>Pennsylvania Department of Agriculture, Harrisburg 17110.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Greene</LastName><ForeName>Matthew</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ivors</LastName><ForeName>Kelly L</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Mountain Horticultural Crops Research & Extension Center, North Carolina State University, Fletcher 28732.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Balci</LastName><ForeName>Yilmaz</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Division of Plant & Soil Sciences, West Virginia University, Morgantown 26506.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peiman</LastName><ForeName>Masoomeh</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Riverside 92521.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Erwin</LastName><ForeName>Donald C</ForeName><Initials>DC</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Riverside 92521.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coffey</LastName><ForeName>Michael D</ForeName><Initials>MD</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Riverside 92521.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rossman</LastName><ForeName>Amy</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Farr</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cline</LastName><ForeName>Erica</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Systematic Botany & Mycology Laboratory, Beltsville, MD 20705.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grünwald</LastName><ForeName>Niklaus J</ForeName><Initials>NJ</Initials><AffiliationInfo><Affiliation>USDA-ARS Horticultural Crops Research Laboratory, Corvallis, OR 97330.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luster</LastName><ForeName>Douglas G</ForeName><Initials>DG</Initials><AffiliationInfo><Affiliation>USDA-ARS, Foreign Disease-Weed Science Research Unit, Ft. Detrick, MD 21702.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schrandt</LastName><ForeName>Julia</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>USDA-ARS, Salinas, CA 93906.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Frank</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>USDA-ARS, Salinas, CA 93906.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ribeiro</LastName><ForeName>Olaf K</ForeName><Initials>OK</Initials><AffiliationInfo><Affiliation>Ribeiro Plant Lab, Inc., Bainbridge Island, WA 98110.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Makalowska</LastName><ForeName>Izabela</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Center for Computational Genomics.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Seogchan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Pennsylvania State University.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Dis</MedlineTA><NlmUniqueID>9882809</NlmUniqueID><ISSNLinking>0191-2917</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">culture collection</Keyword><Keyword MajorTopicYN="N">disease management</Keyword><Keyword MajorTopicYN="N">invasive pathogens</Keyword><Keyword MajorTopicYN="N">molecular diagnosis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>2</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>6</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>6</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30769728</ArticleId><ArticleId IdType="doi">10.1094/PDIS-92-6-0966</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li><li>États-Unis</li></country><region><li>Californie</li><li>Maryland</li><li>Oregon</li><li>Pennsylvanie</li><li>Région capitale de Séoul</li><li>Washington (État)</li></region><settlement><li>Séoul</li><li>University Park (Pennsylvanie)</li></settlement><orgName><li>Université d'État de Pennsylvanie</li><li>Université nationale de Séoul</li></orgName></list><tree><noCountry><name sortKey="Balci, Yilmaz" sort="Balci, Yilmaz" uniqKey="Balci Y" first="Yilmaz" last="Balci">Yilmaz Balci</name><name sortKey="Coffey, Michael D" sort="Coffey, Michael D" uniqKey="Coffey M" first="Michael D" last="Coffey">Michael D. Coffey</name><name sortKey="Erwin, Donald C" sort="Erwin, Donald C" uniqKey="Erwin D" first="Donald C" last="Erwin">Donald C. Erwin</name><name sortKey="Greene, Matthew" sort="Greene, Matthew" uniqKey="Greene M" first="Matthew" last="Greene">Matthew Greene</name><name sortKey="Ivors, Kelly L" sort="Ivors, Kelly L" uniqKey="Ivors K" first="Kelly L" last="Ivors">Kelly L. Ivors</name><name sortKey="Kim, Seong H" sort="Kim, Seong H" uniqKey="Kim S" first="Seong H" last="Kim">Seong H. Kim</name><name sortKey="Makalowska, Izabela" sort="Makalowska, Izabela" uniqKey="Makalowska I" first="Izabela" last="Makalowska">Izabela Makalowska</name><name sortKey="Park, Bongsoo" sort="Park, Bongsoo" uniqKey="Park B" first="Bongsoo" last="Park">Bongsoo Park</name><name sortKey="Peiman, Masoomeh" sort="Peiman, Masoomeh" uniqKey="Peiman M" first="Masoomeh" last="Peiman">Masoomeh Peiman</name></noCountry><country name="Corée du Sud"><region name="Région capitale de Séoul"><name sortKey="Park, Jongsun" sort="Park, Jongsun" uniqKey="Park J" first="Jongsun" last="Park">Jongsun Park</name></region><name sortKey="Jung, Kyongyong" sort="Jung, Kyongyong" uniqKey="Jung K" first="Kyongyong" last="Jung">Kyongyong Jung</name><name sortKey="Lee, Yong Hwan" sort="Lee, Yong Hwan" uniqKey="Lee Y" first="Yong-Hwan" last="Lee">Yong-Hwan Lee</name></country><country name="États-Unis"><region name="Pennsylvanie"><name sortKey="Veeraraghavan, Narayanan" sort="Veeraraghavan, Narayanan" uniqKey="Veeraraghavan N" first="Narayanan" last="Veeraraghavan">Narayanan Veeraraghavan</name></region><name sortKey="Blair, Jaime E" sort="Blair, Jaime E" uniqKey="Blair J" first="Jaime E" last="Blair">Jaime E. Blair</name><name sortKey="Cline, Erica" sort="Cline, Erica" uniqKey="Cline E" first="Erica" last="Cline">Erica Cline</name><name sortKey="Farr, David" sort="Farr, David" uniqKey="Farr D" first="David" last="Farr">David Farr</name><name sortKey="Geiser, David M" sort="Geiser, David M" uniqKey="Geiser D" first="David M" last="Geiser">David M. Geiser</name><name sortKey="Grunwald, Niklaus J" sort="Grunwald, Niklaus J" uniqKey="Grunwald N" first="Niklaus J" last="Grünwald">Niklaus J. Grünwald</name><name sortKey="Isard, Scott" sort="Isard, Scott" uniqKey="Isard S" first="Scott" last="Isard">Scott Isard</name><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name><name sortKey="Luster, Douglas G" sort="Luster, Douglas G" uniqKey="Luster D" first="Douglas G" last="Luster">Douglas G. Luster</name><name sortKey="Mansfield, Michele A" sort="Mansfield, Michele A" uniqKey="Mansfield M" first="Michele A" last="Mansfield">Michele A. Mansfield</name><name sortKey="Martin, Frank" sort="Martin, Frank" uniqKey="Martin F" first="Frank" last="Martin">Frank Martin</name><name sortKey="Nikolaeva, Ekaterina" sort="Nikolaeva, Ekaterina" uniqKey="Nikolaeva E" first="Ekaterina" last="Nikolaeva">Ekaterina Nikolaeva</name><name sortKey="Park, Sook Young" sort="Park, Sook Young" uniqKey="Park S" first="Sook-Young" last="Park">Sook-Young Park</name><name sortKey="Ribeiro, Olaf K" sort="Ribeiro, Olaf K" uniqKey="Ribeiro O" first="Olaf K" last="Ribeiro">Olaf K. Ribeiro</name><name sortKey="Rossman, Amy" sort="Rossman, Amy" uniqKey="Rossman A" first="Amy" last="Rossman">Amy Rossman</name><name sortKey="Russo, Joseph" sort="Russo, Joseph" uniqKey="Russo J" first="Joseph" last="Russo">Joseph Russo</name><name sortKey="Schrandt, Julia" sort="Schrandt, Julia" uniqKey="Schrandt J" first="Julia" last="Schrandt">Julia Schrandt</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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